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Human glycogen phosphorylase (tense state) in complex with the allosteric inhibitor AVE2865
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 VAPOR DIFFUSION, HANGING DROP, 7 mg/ml in 20 mM BES, 1 mM EDTA, 0.5 mM DTT, pH 6.5, 50 mM NBG, 2.5 mM AVF (AVE2865)
Crystal Properties Matthews coefficient Solvent content 2.87 57.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.27 α = 90 b = 123.27 β = 90 c = 121.88 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 20 80.8 25212
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.3 19.47 25212 1257 81.21 0.181 0.176 0.1822 0.271 0.1897 RANDOM 56.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.435 r_dihedral_angle_4_deg 20.061 r_dihedral_angle_3_deg 18.882 r_dihedral_angle_1_deg 6.005 r_angle_refined_deg 1.259 r_scangle_it 1.22 r_scbond_it 0.728 r_mcangle_it 0.644 r_mcbond_it 0.354 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.435 r_dihedral_angle_4_deg 20.061 r_dihedral_angle_3_deg 18.882 r_dihedral_angle_1_deg 6.005 r_angle_refined_deg 1.259 r_scangle_it 1.22 r_scbond_it 0.728 r_mcangle_it 0.644 r_mcbond_it 0.354 r_nbtor_refined 0.318 r_symmetry_vdw_refined 0.248 r_nbd_refined 0.24 r_xyhbond_nbd_refined 0.185 r_symmetry_hbond_refined 0.152 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12830 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling