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Crystal structure of phosphorylated human feline sarcoma viral oncogene homologue (v-FES) in complex with staurosporine and a consensus peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BKB PDB entry 3BKB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 30% PEG MME 2000, 0.15M Sodium bromide, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.36 47.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.451 α = 90 b = 76.905 β = 90 c = 150.632 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2008-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 15.347 97.8 0.082 0.082 10.2 3.5 29652 29000
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.09 100 0.472 0.472 2.3 3.5 4265
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3BKB 1.98 15.347 29626 28827 1447 97.3 0.188 0.188 0.185 0.1996 0.247 0.2515 RANDOM 37.689
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 0.09 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.66 r_dihedral_angle_3_deg 13.986 r_dihedral_angle_4_deg 13.834 r_scangle_it 10.374 r_scbond_it 8.37 r_dihedral_angle_1_deg 6.609 r_mcangle_it 4.704 r_mcbond_it 3.492 r_angle_refined_deg 1.603 r_angle_other_deg 1.507
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.66 r_dihedral_angle_3_deg 13.986 r_dihedral_angle_4_deg 13.834 r_scangle_it 10.374 r_scbond_it 8.37 r_dihedral_angle_1_deg 6.609 r_mcangle_it 4.704 r_mcbond_it 3.492 r_angle_refined_deg 1.603 r_angle_other_deg 1.507 r_mcbond_other 1.129 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2796 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 107
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction