☰ Navigation Tabs
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2487U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 5.8 292 PEG6000, KCL, NH4CL, MGCl2, pH 5.8, sitting drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.11 60.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 212.832 α = 90 b = 299.896 β = 90 c = 576.013 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 54-pole harmonic emission undulator, a vertically focusing mirror and a horizontally focusing monochromator 2005-09-18 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 98.2 0.125 12.25 5.9 519260 509913 1.73 72.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 98.7 0.877 1.8 5.2 45662
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 49.83 462394 4546 92.7 0.184 0.1751 0.226 0.2152 RANDOM 52.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.34 0.23 -3.57
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 15.9 c_scangle_it 2.27 c_mcangle_it 2.06 c_scbond_it 1.5 c_improper_angle_d 1.3 c_mcbond_it 1.18 c_angle_deg 1 c_bond_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29375 Nucleic Acid Atoms 61619 Solvent Atoms 7823 Heterogen Atoms 305
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing