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The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 5.8 292 PEG6000, KCL, NH4CL, MGCl2, pH 5.80, sitting drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.08 60.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 211.646 α = 90 b = 299.672 β = 90 c = 573.773 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2000-02-25 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE MARRESEARCH 2000-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.9 NSLS X25 2 SYNCHROTRON APS BEAMLINE 19-ID 1.00 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.4 90 95.6 0.086 26.6 9.1 666819 35.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 49.95 632714 6222 90.5 0.199 0.199 0.1848 0.231 0.2168 RANDOM 45.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6 -0.66 -5.35
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 15.7 c_scangle_it 2.27 c_mcangle_it 2.09 c_scbond_it 1.54 c_improper_angle_d 1.33 c_mcbond_it 1.22 c_angle_deg 1.1 c_bond_d 0.006 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 15.7 c_scangle_it 2.27 c_mcangle_it 2.09 c_scbond_it 1.54 c_improper_angle_d 1.33 c_mcbond_it 1.22 c_angle_deg 1.1 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29375 Nucleic Acid Atoms 61620 Solvent Atoms 7823 Heterogen Atoms 231
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing