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Crystal structure of the enterobactin esterase FES from Shigella flexneri in the presence of enterobactin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 291 20 % PEG 8000, 0.1 M Phosphate-citrate pH 4.2, 0.2 M NaCl, 5 mM Enterobactin, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.19 43.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.305 α = 90 b = 113.245 β = 90 c = 151.123 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.17 46.03 99.6 0.124 8.5 11.1 43586 43586 35.98
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.17 2.25 96.7 0.697 3.25 7 4165
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.17 46.03 41249 41249 2189 98.94 0.192 0.192 0.19 0.1885 0.234 0.2336 RANDOM 38.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.19 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.741 r_dihedral_angle_3_deg 17.006 r_dihedral_angle_4_deg 16.709 r_dihedral_angle_1_deg 6.561 r_scangle_it 4.277 r_scbond_it 2.793 r_mcangle_it 1.883 r_angle_refined_deg 1.624 r_mcbond_it 1.004 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.741 r_dihedral_angle_3_deg 17.006 r_dihedral_angle_4_deg 16.709 r_dihedral_angle_1_deg 6.561 r_scangle_it 4.277 r_scbond_it 2.793 r_mcangle_it 1.883 r_angle_refined_deg 1.624 r_mcbond_it 1.004 r_nbtor_refined 0.31 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.192 r_symmetry_hbond_refined 0.162 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.113 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6252 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXL-97 phasing RESOLVE phasing MLPHARE phasing