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Crystal structure of reduced DsbL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other ANOTHER CRYSTAL FORM OF DSBL SOLVED BY SAD USING CADMIUM ANOMALOUS SIGNAL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 0.1 M acetic acid-NaOH pH 4.6, 0.14 M CdCl2, 29% PEG 400, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.91 57.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.945 α = 90 b = 66.634 β = 107.02 c = 77.891 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARMOSAIC 225 mm CCD DYNAMICALLY BENDABLE MIRROR 2007-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.8555 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 20 97.2 0.071 13.7 4.3 70367 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.65 96.3 0.382 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT ANOTHER CRYSTAL FORM OF DSBL SOLVED BY SAD USING CADMIUM ANOMALOUS SIGNAL 1.55 19.74 68140 2224 97.34 0.16502 0.16407 0.1639 0.18892 0.1883 RANDOM 16.797
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.756 r_dihedral_angle_3_deg 11.914 r_dihedral_angle_4_deg 7.849 r_dihedral_angle_1_deg 4.721 r_scangle_it 2.14 r_scbond_it 1.408 r_angle_refined_deg 0.997 r_mcangle_it 0.855 r_mcbond_it 0.524 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.756 r_dihedral_angle_3_deg 11.914 r_dihedral_angle_4_deg 7.849 r_dihedral_angle_1_deg 4.721 r_scangle_it 2.14 r_scbond_it 1.408 r_angle_refined_deg 0.997 r_mcangle_it 0.855 r_mcbond_it 0.524 r_nbtor_refined 0.309 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.162 r_metal_ion_refined 0.131 r_xyhbond_nbd_refined 0.129 r_chiral_restr 0.075 r_symmetry_metal_ion_refined 0.011 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3317 Nucleic Acid Atoms Solvent Atoms 739 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing