☰ Navigation Tabs
Crystal Structure of G protein coupled receptor kinase 1 bound to ADP and magnesium chloride at 2.6A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C4Z PDB ENTRY 3C4Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.25 277 PEG 8000, NaCl, glycerol, MES pH 6.25, ADP, magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.84 56.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.504 α = 90 b = 122.304 β = 90 c = 174.076 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97934 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 25 43786
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3C4Z 2.6 20 43677 99.85 0.18984 0.18984 0.1917 0.1899 33.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.02 -2.99 0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.051 r_dihedral_angle_4_deg 18.216 r_dihedral_angle_3_deg 15.064 r_dihedral_angle_1_deg 5.598 r_scangle_it 1.794 r_angle_refined_deg 1.244 r_scbond_it 1.179 r_angle_other_deg 0.838 r_mcangle_it 0.769 r_mcbond_it 0.702
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.051 r_dihedral_angle_4_deg 18.216 r_dihedral_angle_3_deg 15.064 r_dihedral_angle_1_deg 5.598 r_scangle_it 1.794 r_angle_refined_deg 1.244 r_scbond_it 1.179 r_angle_other_deg 0.838 r_mcangle_it 0.769 r_mcbond_it 0.702 r_symmetry_vdw_other 0.235 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.194 r_nbtor_refined 0.184 r_nbd_other 0.181 r_metal_ion_refined 0.168 r_symmetry_vdw_refined 0.164 r_xyhbond_nbd_refined 0.149 r_mcbond_other 0.093 r_nbtor_other 0.084 r_chiral_restr 0.066 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7989 Nucleic Acid Atoms Solvent Atoms 303 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling