☰ Navigation Tabs
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295 20-26% PEG400, 100 mM HEPES pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.4 48.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.496 α = 90 b = 66.496 β = 90 c = 134.081 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 KOHZU: Double Crystal Si(111) 2007-02-15 M SINGLE WAVELENGTH 2 1 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2007-02-15
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.9795 ALS 8.3.1 2 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9795 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 40 90 0.06 0.045 31.7 9.3 30584 2 2 24.89
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.724 56.55 0.444 0.368 2.27 4.6 1374
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.68 40 31447 1675 94.25 0.1814 0.17979 0.1823 0.21036 0.2153 RANDOM 25.111
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.56 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.949 r_dihedral_angle_4_deg 20.787 r_dihedral_angle_3_deg 14.389 r_dihedral_angle_1_deg 5.106 r_scangle_it 4.404 r_scbond_it 2.782 r_mcangle_it 1.532 r_angle_refined_deg 1.406 r_mcbond_it 0.836 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.949 r_dihedral_angle_4_deg 20.787 r_dihedral_angle_3_deg 14.389 r_dihedral_angle_1_deg 5.106 r_scangle_it 4.404 r_scbond_it 2.782 r_mcangle_it 1.532 r_angle_refined_deg 1.406 r_mcbond_it 0.836 r_chiral_restr 0.102 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1992 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing