☰ Navigation Tabs
ALIX Bro1-domain:CHMIP4A co-crystal structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OEW 2oew.pdb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 15% PEG 8,000, 100mM Na MES pH 6.5, 200mM Na Acetate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.75 55.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.668 α = 90 b = 62.681 β = 122.13 c = 76.124 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-11-20 M SINGLE WAVELENGTH 2 1 x-ray CCD MARMOSAIC 325 mm CCD 2007-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.97607 SSRL BL7-1 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.98397 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.15 50 94.9 25024
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.15 2.23 75.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2oew.pdb 2.15 32.22 23212 23212 1799 94.92 0.21868 0.21868 0.21377 0.2328 0.28403 0.3063 RANDOM 33.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.46 0.14 3.08 -1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.788 r_dihedral_angle_3_deg 19.85 r_dihedral_angle_4_deg 19.274 r_dihedral_angle_1_deg 7.394 r_scangle_it 3.799 r_scbond_it 2.445 r_mcangle_it 1.711 r_angle_refined_deg 1.71 r_mcbond_it 0.971 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.788 r_dihedral_angle_3_deg 19.85 r_dihedral_angle_4_deg 19.274 r_dihedral_angle_1_deg 7.394 r_scangle_it 3.799 r_scbond_it 2.445 r_mcangle_it 1.711 r_angle_refined_deg 1.71 r_mcbond_it 0.971 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.282 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.202 r_symmetry_vdw_refined 0.128 r_chiral_restr 0.123 r_bond_refined_d 0.019 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2910 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling REFMAC phasing