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Cre-loxP Synaptic structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CRX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 MPD, Acetate, Calcium Chloride, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.13 60.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.413 α = 90 b = 136.413 β = 90 c = 218.826 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Double crystal 2007-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9794 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.9 0.09 6.2 119629
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 0.395 5 6.2 2487
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1CRX 2.2 40.13 119629 6018 99.94 0.194 0.192 0.1909 0.228 0.2268 RANDOM 31.872
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.626 r_dihedral_angle_4_deg 18.114 r_dihedral_angle_3_deg 17.486 r_dihedral_angle_1_deg 5.672 r_scangle_it 3.263 r_scbond_it 2.116 r_angle_refined_deg 1.555 r_mcangle_it 1.449 r_mcbond_it 0.909 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.626 r_dihedral_angle_4_deg 18.114 r_dihedral_angle_3_deg 17.486 r_dihedral_angle_1_deg 5.672 r_scangle_it 3.263 r_scbond_it 2.116 r_angle_refined_deg 1.555 r_mcangle_it 1.449 r_mcbond_it 0.909 r_nbtor_refined 0.297 r_symmetry_vdw_refined 0.291 r_symmetry_hbond_refined 0.23 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.09 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10188 Nucleic Acid Atoms 2807 Solvent Atoms 466 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing