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Crystal Structure of Apo NotI Restriction Endonuclease
Crystallization Crystal Properties Matthews coefficient Solvent content 2.25 45.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.893 α = 90 b = 74.893 β = 90 c = 274.11 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9804, 0.9805, 0.9744, 1.0048 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.6 0.109 11.2 26 20201
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 97.1 0.317 21 1907
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 45.83 20107 1028 99.6 0.266 0.262 0.2619 0.335 0.3305 RANDOM 64.375
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.6 -5.6 11.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.045 r_dihedral_angle_3_deg 17.779 r_dihedral_angle_4_deg 12.273 r_dihedral_angle_1_deg 5.054 r_angle_refined_deg 1.103 r_scangle_it 0.716 r_mcangle_it 0.509 r_scbond_it 0.445 r_mcbond_it 0.306 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.045 r_dihedral_angle_3_deg 17.779 r_dihedral_angle_4_deg 12.273 r_dihedral_angle_1_deg 5.054 r_angle_refined_deg 1.103 r_scangle_it 0.716 r_mcangle_it 0.509 r_scbond_it 0.445 r_mcbond_it 0.306 r_nbtor_refined 0.3 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.19 r_xyhbond_nbd_refined 0.123 r_symmetry_hbond_refined 0.122 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5148 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection SHARP phasing