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Crystal structure of uncharacterized metallo protein from Vibrio cholerae with beta-lactamase like fold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 0.1M HEPES, 0.25M Sodium chloride, 25% (w/v) PEG 4000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.48 50.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.433 α = 99.69 b = 94.839 β = 97.9 c = 94.591 γ = 116.13
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Mirrors 2006-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 1.0000 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 97.4 0.062 18.6 3.5 224520 224520 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 94.2 0.394 3 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.8 25 213579 11269 97.36 0.16873 0.16667 0.1665 0.20754 0.2069 RANDOM 27.265
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.43 -0.2 1.49 -1.26 0.15 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.716 r_dihedral_angle_4_deg 13.506 r_dihedral_angle_3_deg 10.547 r_dihedral_angle_1_deg 4.167 r_scangle_it 3.859 r_scbond_it 2.736 r_mcangle_it 1.81 r_angle_refined_deg 1.66 r_mcbond_it 1.286 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.716 r_dihedral_angle_4_deg 13.506 r_dihedral_angle_3_deg 10.547 r_dihedral_angle_1_deg 4.167 r_scangle_it 3.859 r_scbond_it 2.736 r_mcangle_it 1.81 r_angle_refined_deg 1.66 r_mcbond_it 1.286 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.129 r_metal_ion_refined 0.111 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17064 Nucleic Acid Atoms Solvent Atoms 2455 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing