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Snow Flea Antifreeze Protein Racemate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B0G PDB ENTRY 3B0G
Crystallization Crystal Properties Matthews coefficient Solvent content 2.05 40.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.603 α = 88.69 b = 32.404 β = 89.18 c = 59.849 γ = 73.41
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.95 50 78.2 0.084 17.4 4.3 101192 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.95 0.98 18.9 0.42 3.6 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB ENTRY 3B0G 1 25 92050 92050 4909 87.1 0.219 0.218 0.2306 0.233 0.2446 RANDOM 7.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.27 0.67 -0.45 -0.06 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.875 r_dihedral_angle_3_deg 11.17 r_dihedral_angle_1_deg 7.079 r_dihedral_angle_4_deg 4.052 r_sphericity_bonded 3.627 r_scangle_it 3.348 r_scbond_it 2.539 r_mcangle_it 2.006 r_angle_refined_deg 1.613 r_mcbond_it 1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.875 r_dihedral_angle_3_deg 11.17 r_dihedral_angle_1_deg 7.079 r_dihedral_angle_4_deg 4.052 r_sphericity_bonded 3.627 r_scangle_it 3.348 r_scbond_it 2.539 r_mcangle_it 2.006 r_angle_refined_deg 1.613 r_mcbond_it 1.44 r_angle_other_deg 1.101 r_rigid_bond_restr 1.017 r_mcbond_other 0.629 r_symmetry_hbond_refined 0.392 r_symmetry_vdw_refined 0.237 r_symmetry_vdw_other 0.203 r_nbd_refined 0.183 r_nbtor_refined 0.179 r_nbd_other 0.173 r_xyhbond_nbd_refined 0.109 r_nbtor_other 0.099 r_chiral_restr 0.065 r_bond_other_d 0.015 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 895 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling