X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
in silico modelHybrid model generated by Rosetta

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.629020% PEG 3350, 0.28M KF, 0.1M HEPES, 5mM DTT, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
1.9236.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.695α = 90
b = 65.604β = 103.49
c = 62.69γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2005-06-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97915SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.438.6880.06410.93.3107191071952

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTHybrid model generated by Rosetta2.4201017951086.730.216160.21280.28857RANDOM25.677
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.470.011.11-0.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.07
r_dihedral_angle_3_deg13.978
r_dihedral_angle_4_deg13.42
r_dihedral_angle_1_deg5.622
r_scangle_it1.017
r_angle_refined_deg0.961
r_angle_other_deg0.765
r_mcangle_it0.719
r_scbond_it0.713
r_mcbond_it0.422
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.07
r_dihedral_angle_3_deg13.978
r_dihedral_angle_4_deg13.42
r_dihedral_angle_1_deg5.622
r_scangle_it1.017
r_angle_refined_deg0.961
r_angle_other_deg0.765
r_mcangle_it0.719
r_scbond_it0.713
r_mcbond_it0.422
r_nbtor_refined0.181
r_nbd_refined0.172
r_nbd_other0.172
r_symmetry_vdw_other0.166
r_symmetry_hbond_refined0.162
r_xyhbond_nbd_refined0.136
r_symmetry_vdw_refined0.107
r_nbtor_other0.082
r_mcbond_other0.056
r_chiral_restr0.055
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2494
Nucleic Acid Atoms
Solvent Atoms45
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
MOSFLMdata reduction
SCALAdata scaling
SOLVEphasing