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Lipoxygenase-1 (Soybean) I553L Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F8N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 PEG3350, SODIUM ACETATE, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 46.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.421 α = 90 b = 92.726 β = 90.29 c = 49.416 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2004-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.00686 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 42.1 95.9 0.049 26.3 4.1 144404 144404
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 85.2 0.531 2.1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1f8n 1.45 29.37 139850 139850 4381 100 0.16682 0.16618 0.1662 0.18684 0.1887 RANDOM 17.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.2 -0.64 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.085 r_dihedral_angle_4_deg 14.168 r_dihedral_angle_3_deg 12.271 r_dihedral_angle_1_deg 6.094 r_scangle_it 3.913 r_scbond_it 2.502 r_angle_refined_deg 1.628 r_mcangle_it 1.528 r_mcbond_it 0.907 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.085 r_dihedral_angle_4_deg 14.168 r_dihedral_angle_3_deg 12.271 r_dihedral_angle_1_deg 6.094 r_scangle_it 3.913 r_scbond_it 2.502 r_angle_refined_deg 1.628 r_mcangle_it 1.528 r_mcbond_it 0.907 r_nbtor_refined 0.316 r_nbd_refined 0.253 r_symmetry_vdw_refined 0.19 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.117 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6518 Nucleic Acid Atoms Solvent Atoms 738 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing