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Crystal structure of cyclopropane-fatty-acyl-phospholipid synthase-like protein (YP_807781.1) from Lactobacillus casei ATCC 334 at 1.85 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 277 NANODROP, 0.2M NH4OAc, 30.0% PEG 4000, 0.1M Citrate pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.22 44.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.136 α = 90 b = 42.381 β = 103.87 c = 154.014 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97916 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 40.825 99.5 0.146 0.146 5.1 5.2 45283 13.78
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 97.2 0.611 0.611 1.3 4.6 6400
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 40.825 45282 2285 99.41 0.188 0.185 0.1895 0.242 0.2441 RANDOM 14.309
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 -1 0.64 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.209 r_dihedral_angle_4_deg 16.748 r_dihedral_angle_3_deg 14.089 r_dihedral_angle_1_deg 5.831 r_scangle_it 3.457 r_scbond_it 2.338 r_angle_refined_deg 1.488 r_mcangle_it 1.369 r_angle_other_deg 1.011 r_mcbond_it 0.797
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.209 r_dihedral_angle_4_deg 16.748 r_dihedral_angle_3_deg 14.089 r_dihedral_angle_1_deg 5.831 r_scangle_it 3.457 r_scbond_it 2.338 r_angle_refined_deg 1.488 r_mcangle_it 1.369 r_angle_other_deg 1.011 r_mcbond_it 0.797 r_mcbond_other 0.213 r_chiral_restr 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4152 Nucleic Acid Atoms Solvent Atoms 492 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHARP phasing SHELXD phasing