X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop629825% PEG 3350 w/v, 0.4M Li2SO4, 0.1M Bis-Tris pH 6.0, hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2440.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.323α = 90
b = 111.864β = 93.71
c = 75.181γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXISMirrors2006-02-20SINGLE WAVELENGTH
21x-ray100CCDADSC QUANTUM 315Vertical focusing mirror2006-02-20MAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418
2SYNCHROTRONSSRL BEAMLINE BL9-10.97929, 0.97925, 0.91837SSRLBL9-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.375.02496.30.1180.1186.12.548240
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.42810.4540.4541.625900

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.338.1545759245796.230.184630.181170.25018RANDOM24.182
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.06-0.060.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.176
r_dihedral_angle_4_deg23.57
r_dihedral_angle_3_deg16.329
r_dihedral_angle_1_deg6.219
r_scangle_it2.234
r_mcangle_it2.215
r_scbond_it1.52
r_mcbond_it1.482
r_angle_refined_deg1.447
r_nbtor_refined0.299
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.176
r_dihedral_angle_4_deg23.57
r_dihedral_angle_3_deg16.329
r_dihedral_angle_1_deg6.219
r_scangle_it2.234
r_mcangle_it2.215
r_scbond_it1.52
r_mcbond_it1.482
r_angle_refined_deg1.447
r_nbtor_refined0.299
r_symmetry_vdw_refined0.217
r_nbd_refined0.204
r_symmetry_hbond_refined0.176
r_xyhbond_nbd_refined0.17
r_chiral_restr0.093
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9435
Nucleic Acid Atoms
Solvent Atoms449
Heterogen Atoms80

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection