☰ Navigation Tabs
Crystal structure of putative MarR-like transcription regulator (NP_978771.1) from Bacillus cereus ATCC 10987 at 2.38 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 NANODROP, 24.9% PEG 3350, 0.214M Potassium nitrate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.52 51.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.321 α = 90 b = 71.321 β = 90 c = 65.72 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-10-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.94939, 0.97953, 0.97939 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 48.337 99.7 0.061 16.25 7225 -3 68.524
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.46 100 0.879 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.38 48.337 7194 337 99.76 0.234 0.233 0.2363 0.253 0.263 RANDOM 64.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.66 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.113 r_dihedral_angle_4_deg 14.904 r_dihedral_angle_3_deg 13.418 r_scangle_it 7.107 r_scbond_it 5.211 r_dihedral_angle_1_deg 2.977 r_mcangle_it 2.726 r_mcbond_it 1.937 r_angle_refined_deg 1.549 r_angle_other_deg 1.262
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.113 r_dihedral_angle_4_deg 14.904 r_dihedral_angle_3_deg 13.418 r_scangle_it 7.107 r_scbond_it 5.211 r_dihedral_angle_1_deg 2.977 r_mcangle_it 2.726 r_mcbond_it 1.937 r_angle_refined_deg 1.549 r_angle_other_deg 1.262 r_mcbond_other 0.271 r_nbd_refined 0.175 r_symmetry_hbond_refined 0.16 r_nbtor_refined 0.148 r_symmetry_vdw_other 0.139 r_xyhbond_nbd_refined 0.12 r_nbd_other 0.119 r_symmetry_vdw_refined 0.113 r_chiral_restr 0.086 r_nbtor_other 0.075 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1109 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing