☰ Navigation Tabs
met-Perch Hemoglobin at pH 5.7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OUU
Crystallization Crystal Properties Matthews coefficient Solvent content 2.34 47.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.225 α = 90 b = 84.78 β = 90 c = 121.905 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MAR CCD 130 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 69.67 44493
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OUU 1.9 69.67 44493 2367 98.72 0.18707 0.18478 0.1837 0.22989 0.2277 RANDOM 17.562
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 -1.97 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.508 r_dihedral_angle_3_deg 16.043 r_dihedral_angle_4_deg 14.627 r_dihedral_angle_1_deg 5.075 r_scangle_it 3.973 r_scbond_it 2.685 r_angle_refined_deg 1.55 r_mcangle_it 1.517 r_mcbond_it 0.967 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.508 r_dihedral_angle_3_deg 16.043 r_dihedral_angle_4_deg 14.627 r_dihedral_angle_1_deg 5.075 r_scangle_it 3.973 r_scbond_it 2.685 r_angle_refined_deg 1.55 r_mcangle_it 1.517 r_mcbond_it 0.967 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.157 r_chiral_restr 0.11 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4434 Nucleic Acid Atoms Solvent Atoms 340 Heterogen Atoms 178
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing