X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529320% ETOH, 0.1M TRIS PH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.8668.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 135α = 90
b = 135β = 90
c = 50.52γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-11-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-41.03992ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.33099.30.04718.893.652366623489-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.361000.4172.953.751748

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.3302366623120113197.730.1810.1810.1790.23RANDOM38.697
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.7-0.35-0.71.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.799
r_dihedral_angle_4_deg17.715
r_dihedral_angle_3_deg17.066
r_dihedral_angle_1_deg7.036
r_scangle_it3.07
r_scbond_it2.255
r_angle_refined_deg1.814
r_mcangle_it1.252
r_mcbond_it1.007
r_angle_other_deg0.998
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.799
r_dihedral_angle_4_deg17.715
r_dihedral_angle_3_deg17.066
r_dihedral_angle_1_deg7.036
r_scangle_it3.07
r_scbond_it2.255
r_angle_refined_deg1.814
r_mcangle_it1.252
r_mcbond_it1.007
r_angle_other_deg0.998
r_symmetry_vdw_other0.237
r_symmetry_hbond_refined0.224
r_mcbond_other0.213
r_nbd_refined0.209
r_nbd_other0.207
r_xyhbond_nbd_refined0.192
r_nbtor_refined0.183
r_symmetry_vdw_refined0.174
r_chiral_restr0.108
r_nbtor_other0.093
r_bond_refined_d0.022
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2364
Nucleic Acid Atoms
Solvent Atoms144
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MxCuBEdata collection
XDSdata reduction
XSCALEdata scaling