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Crystal structure of human Carbonyl Reductase 1 in complex with glutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WMA PDB ENTRY 1WMA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 vapor diffusion, hanging drop, temperature 298K, pH7.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.4 48.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.644 α = 90 b = 55.473 β = 90 c = 95.736 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 27 93.3 0.029 32.3 2.3 27157
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.83 91.7 0.042 1.8 2603
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WMA 1.77 26.27 27133 1384 93.35 0.161 0.159 0.1568 0.196 0.1958 RANDOM 15.277
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.76 0.84 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.884 r_dihedral_angle_4_deg 14.906 r_dihedral_angle_3_deg 11.833 r_dihedral_angle_1_deg 4.903 r_scangle_it 2.591 r_scbond_it 1.62 r_angle_refined_deg 1.339 r_mcangle_it 1.002 r_mcbond_it 0.593 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.884 r_dihedral_angle_4_deg 14.906 r_dihedral_angle_3_deg 11.833 r_dihedral_angle_1_deg 4.903 r_scangle_it 2.591 r_scbond_it 1.62 r_angle_refined_deg 1.339 r_mcangle_it 1.002 r_mcbond_it 0.593 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.116 r_symmetry_hbond_refined 0.103 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2065 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 172
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection