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Crystal structure of human sulfotransferase SULT1C1 in complex with PAP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XV1 PDB entry 1XV1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 297 1.0M Na Citrate, 0.1M Cacodylate, pH 6.5, VAPOR DIFFUSION, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.19 43.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.824 α = 90 b = 40.536 β = 91.83 c = 154.612 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Si 111 2005-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97972 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 95.6 0.042 0.042 13.4 4.7 54077 54077 22.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.83 70.2 0.205 0.205 4 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1XV1 1.8 50 52393 52393 1670 95.5 0.184 0.184 0.183 0.183 0.227 0.173 RANDOM 27.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.02 1.35 -0.58 -1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.606 r_dihedral_angle_4_deg 18.625 r_dihedral_angle_3_deg 15.579 r_dihedral_angle_1_deg 5.776 r_scangle_it 4.022 r_scbond_it 2.588 r_mcangle_it 1.677 r_angle_refined_deg 1.533 r_mcbond_it 1.1 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.606 r_dihedral_angle_4_deg 18.625 r_dihedral_angle_3_deg 15.579 r_dihedral_angle_1_deg 5.776 r_scangle_it 4.022 r_scbond_it 2.588 r_mcangle_it 1.677 r_angle_refined_deg 1.533 r_mcbond_it 1.1 r_nbtor_refined 0.312 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.193 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.111 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4225 Nucleic Acid Atoms Solvent Atoms 512 Heterogen Atoms 54
Software Software Software Name Purpose MOLREP phasing REFMAC refinement Coot model building ADSC data collection HKL-2000 data reduction SCALEPACK data scaling