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Crystal structure of CD8alpha-beta in complex with YTS 156.7 FAB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 6.2 296 PEG 8000, 0.1 M Na/K phosphate, 0.2 M NaCl, pH 6.2, sitting drop, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.78 55.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.779 α = 90 b = 92.747 β = 90 c = 190.31 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.2 CCD ADSC QUANTUM 315 2005-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 97.5 0.131 9.6 45395 70.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 99.8 0.579 2.17 4468
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 42.33 42077 42077 2216 97.57 0.238 0.235 0.2547 0.284 0.3016 RANDOM 55.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.44 2.26 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.958 r_dihedral_angle_4_deg 16.609 r_dihedral_angle_3_deg 15.508 r_dihedral_angle_1_deg 7.612 r_scangle_it 6.595 r_scbond_it 5.145 r_mcangle_it 2.847 r_mcbond_it 2.452 r_angle_refined_deg 1.576 r_angle_other_deg 0.907
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.958 r_dihedral_angle_4_deg 16.609 r_dihedral_angle_3_deg 15.508 r_dihedral_angle_1_deg 7.612 r_scangle_it 6.595 r_scbond_it 5.145 r_mcangle_it 2.847 r_mcbond_it 2.452 r_angle_refined_deg 1.576 r_angle_other_deg 0.907 r_mcbond_other 0.324 r_symmetry_vdw_refined 0.312 r_symmetry_vdw_other 0.277 r_symmetry_hbond_refined 0.244 r_nbd_refined 0.238 r_nbd_other 0.215 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.172 r_nbtor_other 0.091 r_chiral_restr 0.086 r_xyhbond_nbd_other 0.083 r_bond_refined_d 0.015 r_bond_other_d 0.007 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10234 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction