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CRYSTAL STRUCTURE OF A PUTATIVE AROMATIC RING HYDROXYLASE (SARO_3538) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM AT 1.75 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 NANODROP, 30.0% Glycerol, 5.6% PEG 4000, 0.1M Acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.85 α = 90 b = 95.85 β = 90 c = 232.3 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-08-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0000, 0.9798, 0.9796 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 29.54 99.4 0.091 12.12 109179 -3 17.44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 94.4 0.736 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 29.54 109062 5461 99.63 0.169 0.167 0.1715 0.199 0.2018 RANDOM 21.332
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 -0.73 1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.997 r_dihedral_angle_4_deg 22.614 r_dihedral_angle_3_deg 11.651 r_dihedral_angle_1_deg 6.667 r_scangle_it 3.183 r_scbond_it 2.147 r_angle_refined_deg 1.477 r_mcangle_it 1.232 r_angle_other_deg 0.922 r_mcbond_it 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.997 r_dihedral_angle_4_deg 22.614 r_dihedral_angle_3_deg 11.651 r_dihedral_angle_1_deg 6.667 r_scangle_it 3.183 r_scbond_it 2.147 r_angle_refined_deg 1.477 r_mcangle_it 1.232 r_angle_other_deg 0.922 r_mcbond_it 0.901 r_symmetry_vdw_other 0.239 r_mcbond_other 0.225 r_nbd_refined 0.203 r_nbd_other 0.203 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.176 r_symmetry_vdw_refined 0.114 r_chiral_restr 0.092 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6632 Nucleic Acid Atoms Solvent Atoms 968 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing SHARP phasing