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Crystal structure of the prophage Lp1 protein 11
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 289 0.1M Na/K Phosphate pH 6.2, 10% PEG 3000, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.22 44.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.951 α = 90 b = 65.65 β = 90 c = 27.121 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 36.51 96.27 0.09 32.74 8 5420 5218 2 24.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.053 79.75 0.282 4.85 5.1 405
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 36.51 5218 5218 251 96.27 0.19816 0.19816 0.1956 0.2233 0.24945 0.2843 RANDOM 24.522
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.66 -1.59 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.567 r_dihedral_angle_3_deg 14.472 r_dihedral_angle_4_deg 11.287 r_dihedral_angle_1_deg 5.228 r_scangle_it 3.97 r_scbond_it 2.804 r_mcangle_it 1.648 r_angle_refined_deg 1.497 r_mcbond_it 1.397 r_angle_other_deg 0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.567 r_dihedral_angle_3_deg 14.472 r_dihedral_angle_4_deg 11.287 r_dihedral_angle_1_deg 5.228 r_scangle_it 3.97 r_scbond_it 2.804 r_mcangle_it 1.648 r_angle_refined_deg 1.497 r_mcbond_it 1.397 r_angle_other_deg 0.99 r_mcbond_other 0.474 r_symmetry_vdw_other 0.284 r_symmetry_vdw_refined 0.243 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.221 r_nbtor_refined 0.186 r_nbd_other 0.185 r_symmetry_hbond_refined 0.092 r_nbtor_other 0.089 r_chiral_restr 0.077 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 597 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling MLPHARE phasing