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Crystal structure of phenazine biosynthesis protein PhzA/B from Burkholderia cepacia R18194, apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 285 16 20% (w/v) PEG 3350, 0.2 M NH4-acetate, 0.1 M Bis-TRIS pH 6.1 6.7, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.26 45.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.66 α = 90 b = 64.66 β = 90 c = 160.95 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Si(111)monochromator 2006-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9786 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 99.5 0.059 19.3 8.3 31581 31421 3 37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 99.4 0.374 3.9 7.6 4408
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 19.69 31420 1582 99.62 0.188 0.186 0.245 0.2532 RANDOM 38.187
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.697 r_dihedral_angle_4_deg 18.634 r_dihedral_angle_3_deg 16.025 r_dihedral_angle_1_deg 6.709 r_scangle_it 6.014 r_scbond_it 4.368 r_mcangle_it 3.121 r_mcbond_other 3.065 r_mcbond_it 2.467 r_angle_refined_deg 1.686
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.697 r_dihedral_angle_4_deg 18.634 r_dihedral_angle_3_deg 16.025 r_dihedral_angle_1_deg 6.709 r_scangle_it 6.014 r_scbond_it 4.368 r_mcangle_it 3.121 r_mcbond_other 3.065 r_mcbond_it 2.467 r_angle_refined_deg 1.686 r_angle_other_deg 1.041 r_symmetry_vdw_other 0.276 r_symmetry_hbond_refined 0.244 r_chiral_restr 0.223 r_nbd_other 0.215 r_xyhbond_nbd_refined 0.208 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.201 r_nbtor_refined 0.18 r_nbtor_other 0.085 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2701 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction XSCALE data scaling SHELXD phasing