☰ Navigation Tabs
Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 4.6 298 PEG 6000, hexanediol, pH 4.6, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.44 49.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.624 α = 90 b = 74.624 β = 90 c = 106.996 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2008-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 100 0.067 12.7 11.5 87958 87885
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 100 0.687 11.1 4430
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 35.23 87958 87885 4406 99.92 0.1833 0.1833 0.1824 0.182 0.2007 0.2011 RANDOM 18.0736
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.593 r_dihedral_angle_4_deg 14.371 r_dihedral_angle_3_deg 11.463 r_dihedral_angle_1_deg 5.668 r_scangle_it 2.242 r_scbond_it 1.303 r_angle_refined_deg 1.077 r_mcangle_it 1 r_mcbond_it 0.529 r_chiral_restr 0.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.593 r_dihedral_angle_4_deg 14.371 r_dihedral_angle_3_deg 11.463 r_dihedral_angle_1_deg 5.668 r_scangle_it 2.242 r_scbond_it 1.303 r_angle_refined_deg 1.077 r_mcangle_it 1 r_mcbond_it 0.529 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4703 Nucleic Acid Atoms Solvent Atoms 407 Heterogen Atoms 102
Software Software Software Name Purpose PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling