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Crystal structure of CEL-IV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WMY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1M HEPES, 4.3M NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 5.86 79.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.065 α = 90 b = 86.065 β = 90 c = 375.321 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 4r 2007-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.978 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 47.9 99.9 0.077 29.4 11.4 31417 63.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 99.5 0.298 8.6 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WMY 3 43.03 29729 1575 99.97 0.1966 0.19565 0.1951 0.21475 0.2124 RANDOM 39.869
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.04 0.07 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.711 r_dihedral_angle_4_deg 24.093 r_dihedral_angle_3_deg 19.373 r_dihedral_angle_1_deg 8.502 r_scangle_it 4.31 r_scbond_it 2.556 r_angle_refined_deg 2.129 r_mcangle_it 1.914 r_mcbond_it 0.956 r_chiral_restr 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.711 r_dihedral_angle_4_deg 24.093 r_dihedral_angle_3_deg 19.373 r_dihedral_angle_1_deg 8.502 r_scangle_it 4.31 r_scbond_it 2.556 r_angle_refined_deg 2.129 r_mcangle_it 1.914 r_mcbond_it 0.956 r_chiral_restr 0.142 r_bond_refined_d 0.024 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4788 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 4
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling