X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1JJI 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.1M Tris-HCl pH 8.5, 0.2M Ammonium phosphate monobasic, 50% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.9458.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.327α = 90
b = 114.752β = 108.84
c = 102.206γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2009-10-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL44B21.0SPring-8BL44B2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.955098.90.0850.06422.76.1120550-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.951.9897.70.4890.4213.15.911631

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1JJI1.9544.28113863604598.950.160770.159030.19361RANDOM26.985
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.120.19-0.120.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.981
r_dihedral_angle_3_deg17.574
r_dihedral_angle_4_deg17.005
r_dihedral_angle_1_deg7.478
r_scangle_it6.671
r_scbond_it4.398
r_mcangle_it2.639
r_mcbond_it1.696
r_angle_refined_deg1.122
r_chiral_restr0.101
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.981
r_dihedral_angle_3_deg17.574
r_dihedral_angle_4_deg17.005
r_dihedral_angle_1_deg7.478
r_scangle_it6.671
r_scbond_it4.398
r_mcangle_it2.639
r_mcbond_it1.696
r_angle_refined_deg1.122
r_chiral_restr0.101
r_gen_planes_refined0.017
r_bond_refined_d0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8948
Nucleic Acid Atoms
Solvent Atoms631
Heterogen Atoms105

Software

Software
Software NamePurpose
BL44XUdata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling