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PAS domain of histidine kinase ThkA (TM1359) (SeMet, F486M/F489M)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.2 293 40% ethanol, 0.05M phosphate-citrate, 5% PEG1000, pH 6.2, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.4 48.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.238 α = 90 b = 43.238 β = 90 c = 116.16 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2005-10-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 0.9795, 0.9797, 0.9789 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 99.2 0.047 55.5 15.2 12735 -3 26.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 99.6 0.126 10.2 13.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 20 12724 619 99.2 0.231 0.229 0.2283 0.258 0.2564 RANDOM 21.354
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 0.62 -1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.812 r_dihedral_angle_4_deg 17.069 r_dihedral_angle_3_deg 15.089 r_dihedral_angle_1_deg 6.201 r_scangle_it 4.7 r_scbond_it 3.268 r_mcangle_it 1.868 r_angle_refined_deg 1.515 r_mcbond_it 1.044 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.812 r_dihedral_angle_4_deg 17.069 r_dihedral_angle_3_deg 15.089 r_dihedral_angle_1_deg 6.201 r_scangle_it 4.7 r_scbond_it 3.268 r_mcangle_it 1.868 r_angle_refined_deg 1.515 r_mcbond_it 1.044 r_nbtor_refined 0.314 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.185 r_symmetry_vdw_refined 0.181 r_symmetry_hbond_refined 0.167 r_chiral_restr 0.108 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 791 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing