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Bacteroides SusCD Unliganded - Closed w/ Plug Domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.591 f_angle_d 0.58 f_chiral_restr 0.042 f_bond_d 0.004 f_plane_restr 0.004
Sample Heterodimer of SusC and SusD
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details 60s incubation time, blot force of 0 and blot time of 3s
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 159992 Reported Resolution (Å) 3.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 3800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.0+ RECONSTRUCTION cryoSPARC 4.0+ MODEL REFINEMENT PHENIX 2.0_5793
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE CTF estimation used for curation, no correction done