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Human Lysine Acetyltransferase KAT2B - Shipped
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NSQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 PEG 3350, PEG 8000, TRIS HCl
Crystal Properties Matthews coefficient Solvent content 2.64 53.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.189 α = 90 b = 87.738 β = 96.708 c = 60.595 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS EIGER2 X 4M 2025-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE VMXi 0.7748 Diamond VMXi
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 60.18 100 0.293 0.998 10.2 15.6 34117
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.897 0.26
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.83 60.18 34091 1726 99.994 0.165 0.1629 0.1657 0.2049 0.1659 31.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.645 0.011 0.56 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.771 r_dihedral_angle_3_deg 12.866 r_lrange_it 8.119 r_lrange_other 8.099 r_scangle_it 6.457 r_scangle_other 6.455 r_dihedral_angle_1_deg 5.935 r_dihedral_angle_2_deg 5.188 r_mcangle_it 4.161 r_mcangle_other 4.159
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.771 r_dihedral_angle_3_deg 12.866 r_lrange_it 8.119 r_lrange_other 8.099 r_scangle_it 6.457 r_scangle_other 6.455 r_dihedral_angle_1_deg 5.935 r_dihedral_angle_2_deg 5.188 r_mcangle_it 4.161 r_mcangle_other 4.159 r_scbond_it 3.988 r_scbond_other 3.987 r_mcbond_it 2.813 r_mcbond_other 2.812 r_angle_refined_deg 1.635 r_angle_other_deg 0.584 r_nbd_other 0.229 r_nbd_refined 0.216 r_symmetry_nbd_other 0.199 r_xyhbond_nbd_refined 0.193 r_nbtor_refined 0.192 r_symmetry_nbd_refined 0.185 r_symmetry_xyhbond_nbd_refined 0.183 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2562 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2.multiplex data reduction Aimless data scaling MOLREP phasing Coot model building