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 33WP | pdb_000033wp

Single protofilament with the Alzheimer tau fold and the V337M mutation from seeded primary murine neurons


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_other31.327
r_long_range_B_refined31.283
r_scangle_other26.992
r_scbond_it16.787
r_scbond_other16.764
r_mcangle_it14.51
r_mcangle_other14.502
r_dihedral_angle_3_deg11.487
r_dihedral_angle_1_deg10.396
r_mcbond_it10.099
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_other31.327
r_long_range_B_refined31.283
r_scangle_other26.992
r_scbond_it16.787
r_scbond_other16.764
r_mcangle_it14.51
r_mcangle_other14.502
r_dihedral_angle_3_deg11.487
r_dihedral_angle_1_deg10.396
r_mcbond_it10.099
r_mcbond_other10.061
r_angle_refined_deg2.019
r_dihedral_angle_2_deg0.843
r_angle_other_deg0.629
r_chiral_restr0.084
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Single protofilament with the Alzheimer tau fold and the V337M mutation from seeded primary murine neurons
Specimen Preparation
Sample Aggregation StateCELL
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles125248
Reported Resolution (Å)2.9
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.88
Angular Rotation-1.353
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeTFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION5.1
CTF CORRECTIONRELION5.1
RECONSTRUCTIONRELION5.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION