Experiment: 30GJ

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6SDR

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	8	293	32% PEG 3350, 0.1M Tris-HCl pH 8.0, 1M LiCl

Crystal Properties
Matthews coefficient	Solvent content
2.36	47.95

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	PIXEL	DECTRIS EIGER R 4M		2025-03-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)	0.9762	PETRA III, EMBL c/o DESY	P14 (MX2)

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1	HARE chip	fixed target

Fixed Target
Diffraction ID	Description	Sample Holding	Support Base	Motion control	Details	Sample Solvent
1	HARE chip	HARE chip	HARE chip			Mother liquor

Measurement
Diffraction ID	Pulse Duration	Pulse Repetition Rate	Focal Spot Size	Pulse Energy	Photons Per Pulse
1	undefined (fs)			undefined (KeV)

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.93	98.787	100	0.9146	0.2854	2.99	73.2		102629

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.93	2.01	100		0.3768	1.0805	1.02	50.3

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.93	98.787	102533	5168	99.996	0.187	0.1849	0.1897	0.2224	0.2255	27.871

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.157			-0.778		0.621

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.458
r_dihedral_angle_4_deg	20.053
r_dihedral_angle_3_deg	14.009
r_dihedral_angle_1_deg	7.237
r_lrange_it	5.42
r_lrange_other	5.409
r_scangle_other	4.051
r_scangle_it	4.043
r_mcangle_it	3.042
r_mcangle_other	3.042

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.458
r_dihedral_angle_4_deg	20.053
r_dihedral_angle_3_deg	14.009
r_dihedral_angle_1_deg	7.237
r_lrange_it	5.42
r_lrange_other	5.409
r_scangle_other	4.051
r_scangle_it	4.043
r_mcangle_it	3.042
r_mcangle_other	3.042
r_scbond_other	2.518
r_scbond_it	2.513
r_mcbond_it	1.987
r_mcbond_other	1.987
r_angle_refined_deg	1.504
r_angle_other_deg	1.258
r_nbd_other	0.22
r_nbd_refined	0.201
r_symmetry_xyhbond_nbd_refined	0.184
r_symmetry_nbd_other	0.178
r_nbtor_refined	0.162
r_xyhbond_nbd_refined	0.124
r_symmetry_nbd_refined	0.086
r_symmetry_nbtor_other	0.077
r_chiral_restr	0.074
r_symmetry_xyhbond_nbd_other	0.027
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9217
Nucleic Acid Atoms
Solvent Atoms	309
Heterogen Atoms	128

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

30GJ | pdb_000030gj