☰ Navigation Tabs
Updated crystal structure of DsbB-DsbA complex from E. coli
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HI7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 293 23% Jeffamine ED2001, 80mM HEPES, 14.4% glycerol, 2mM ZnCl2, pH 7.0, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 5.474029 77.530258
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.5 α = 90 b = 165.5 β = 90 c = 65.92 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MACSCIENCE 2005-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.90 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 61.2 99.94 0.06 18.7 6.9 10179 -4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.7 3.9 99.8 0.527 3.8 7.1 1450
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2HI7 3.7 20 9622 488 99.46 0.30513 0.30368 0.2984 0.33397 0.3284 RANDOM 205.362
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 10.54 10.54 -21.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.754 r_dihedral_angle_3_deg 24.752 r_dihedral_angle_4_deg 18.554 r_dihedral_angle_1_deg 8.589 r_angle_refined_deg 1.544 r_scangle_it 1.475 r_mcangle_it 1.228 r_scbond_it 0.818 r_mcbond_it 0.672 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.754 r_dihedral_angle_3_deg 24.752 r_dihedral_angle_4_deg 18.554 r_dihedral_angle_1_deg 8.589 r_angle_refined_deg 1.544 r_scangle_it 1.475 r_mcangle_it 1.228 r_scbond_it 0.818 r_mcbond_it 0.672 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2642 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MACSCIENCE data collection MOSFLM data reduction SCALA data scaling SHARP phasing