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Crystal Structure of Kusabira-Cyan (KCY), a Cyan-Emitting GFP-Like Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MOU PDB ENTRY 1MOU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 20% PEG 3350, 0.2M LICL, 20MM TRIS/HCL, pH 8.00, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.81 32.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.754 α = 90 b = 42.804 β = 96.28 c = 50.699 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 1.0 SPring-8 BL44B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 91.6 0.042 36604 15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 62.5 0.256 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MOU 1.4 19.49 36604 36588 1823 91.4 0.164 0.164 0.1641 0.181 0.1811 RANDOM 18.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.7 -0.64 10.52 -6.83
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.6 c_scangle_it 3.1 c_scbond_it 2.17 c_angle_deg 1.7 c_mcangle_it 1.47 c_improper_angle_d 1.25 c_mcbond_it 1.05 c_bond_d 0.013 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.6 c_scangle_it 3.1 c_scbond_it 2.17 c_angle_deg 1.7 c_mcangle_it 1.47 c_improper_angle_d 1.25 c_mcbond_it 1.05 c_bond_d 0.013 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1701 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing CNS refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling