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Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 293 300mM sodium chloride, 100mM ammonium sulfate, 100mM MES, 3.9M HCOONa-HCl(pH6.3), 30%(w/v) Glycerol, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 6.317698 80.530884
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.636 α = 90 b = 119.636 β = 90 c = 129.454 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-04-22 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2007-01-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000 Photon Factory BL-17A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000, 0.9792, 0.9796 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.6 50 99.7 0.054 11 33090 32990 65.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.6 2.69 100 0.503 11.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.61 10 32095 1649 98.7 0.238 0.238 0.2366 0.273 0.2701 RANDOM 62.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.69 7.38 -1.69 3.37
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25 c_scangle_it 3.1 c_mcangle_it 2.57 c_scbond_it 2.02 c_mcbond_it 1.49 c_angle_deg 1.4 c_improper_angle_d 0.91 c_bond_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2916 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 7
Software Software Software Name Purpose CNS refinement ugiui data collection HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing