☰ Navigation Tabs
C4S-E247A dCK variant of dCK in complex with cladribine+ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 1.0M Sodium Citrate, 100mM Hepes, pH7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.27 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.39 α = 90 b = 132.71 β = 90 c = 157.47 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.51 30 98.4 0.084 11.5 3.9 20415 20415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.51 2.66 93.6 0.64 2.1 3.8 3068
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Rigid body refinement THROUGHOUT 2.51 30 18169 2046 97.57 0.23878 0.22828 0.2217 0.33226 0.3256 RANDOM 59.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.21 -3.21 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.731 r_dihedral_angle_3_deg 20.413 r_dihedral_angle_4_deg 20 r_dihedral_angle_1_deg 6.96 r_scangle_it 2.075 r_angle_refined_deg 1.636 r_scbond_it 1.35 r_mcangle_it 1.186 r_mcbond_it 0.653 r_symmetry_hbond_refined 0.365
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.731 r_dihedral_angle_3_deg 20.413 r_dihedral_angle_4_deg 20 r_dihedral_angle_1_deg 6.96 r_scangle_it 2.075 r_angle_refined_deg 1.636 r_scbond_it 1.35 r_mcangle_it 1.186 r_mcbond_it 0.653 r_symmetry_hbond_refined 0.365 r_nbtor_refined 0.32 r_symmetry_vdw_refined 0.259 r_nbd_refined 0.245 r_xyhbond_nbd_refined 0.187 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3838 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement SERGUI data collection XDS data reduction XDS data scaling MOLREP phasing