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D202K mutant of P. denitrificans Atp12p
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2P4X PDB ENTRY 2P4X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 278 12% PEG 4000, 100mM Hepes-Na, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.69 54.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.16 α = 102.91 b = 51.047 β = 105.45 c = 67.117 γ = 90.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97924 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.5 0.082 15.3 3.8 48230 48230 20.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 95.6 0.555 2.269 3.1 2304
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2P4X 1.8 35.21 46717 4716 93.9 0.225 0.225 0.2251 0.279 0.279 RANDOM 28.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 -0.59 -0.27 -2.62 0.75 3.49
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.7 c_scangle_it 5.06 c_scbond_it 3.78 c_mcangle_it 3.3 c_mcbond_it 2.53 c_angle_deg 1.4 c_improper_angle_d 1.01 c_bond_d 0.009 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.7 c_scangle_it 5.06 c_scbond_it 3.78 c_mcangle_it 3.3 c_mcbond_it 2.53 c_angle_deg 1.4 c_improper_angle_d 1.01 c_bond_d 0.009 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3642 Nucleic Acid Atoms Solvent Atoms 534 Heterogen Atoms
Software Software Software Name Purpose CNS refinement Accel data collection HKL-2000 data reduction SCALEPACK data scaling CNS phasing