☰ Navigation Tabs
Crystal Structure of the SR Calcium Pump with Bound Aluminium Fluoride, ADP and Calcium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WPE PDB ENTRY 1WPE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.1 283 PEG 400, pH 6.10, MICRODIALYSIS, temperature 283K
Crystal Properties Matthews coefficient Solvent content 4.01 69.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 162.9 α = 90 b = 75.1 β = 109.3 c = 152.1 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 90.8 0.054 27.7 3.5 61807 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.46 58.5 0.35 2.7 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WPE 2.4 12 58529 58265 3093 100 0.24759 0.24633 0.27136 RANDOM 92.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.73 -5.97 12.1 -11.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.696 r_dihedral_angle_4_deg 16.924 r_dihedral_angle_3_deg 16.348 r_dihedral_angle_1_deg 4.722 r_angle_refined_deg 1.01 r_scangle_it 0.969 r_mcangle_it 0.607 r_scbond_it 0.602 r_mcbond_it 0.407 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.696 r_dihedral_angle_4_deg 16.924 r_dihedral_angle_3_deg 16.348 r_dihedral_angle_1_deg 4.722 r_angle_refined_deg 1.01 r_scangle_it 0.969 r_mcangle_it 0.607 r_scbond_it 0.602 r_mcbond_it 0.407 r_nbtor_refined 0.293 r_nbd_refined 0.182 r_xyhbond_nbd_refined 0.118 r_symmetry_hbond_refined 0.109 r_metal_ion_refined 0.096 r_symmetry_vdw_refined 0.094 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7671 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 147
Software Software Software Name Purpose CNS refinement REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing