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Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.27 45.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.367 α = 90 b = 61.785 β = 94.47 c = 90.487 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.9792, 0.9793, 0.9641 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98.6 0.104 9.3 3.3 52841
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 96.6 0.244 3 5163
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 20 52841 2694 97.95 0.172 0.17 0.184 0.219 RANDOM 18.425
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -2.26 -0.69 0.82
RMS Deviations Key Refinement Restraint Deviation TORSION ANGLES, PERIOD I (DEGREES) 6.926 r_scangle_it 5.172 r_scbond_it 3.381 r_angle_refined_deg 2.081 r_mcangle_it 1.956 r_mcbond_it 1.182 r_angle_other_deg 0.946 r_symmetry_vdw_other 0.301 r_nbd_other 0.251 r_symmetry_hbond_refined 0.243
RMS Deviations Key Refinement Restraint Deviation TORSION ANGLES, PERIOD I (DEGREES) 6.926 r_scangle_it 5.172 r_scbond_it 3.381 r_angle_refined_deg 2.081 r_mcangle_it 1.956 r_mcbond_it 1.182 r_angle_other_deg 0.946 r_symmetry_vdw_other 0.301 r_nbd_other 0.251 r_symmetry_hbond_refined 0.243 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.193 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.125 r_nbtor_other 0.088 r_bond_refined_d 0.027 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5016 Nucleic Acid Atoms Solvent Atoms 406 Heterogen Atoms 72
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SOLVE phasing