☰ Navigation Tabs
recombinant horse L-chain apoferritin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AEW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1M Tris-HCl, 0.13% cadmium chloride, 15% PEG4000, 19 mM calcium chloride, 5% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 3.06 59.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.452 α = 90 b = 180.452 β = 90 c = 180.452 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm 2003-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 0.9 SPring-8 BL44B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 99 99.7 25894 9.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AEW 1.75 19.8 24602 1247 100 0.19658 0.19513 0.22523 RANDOM 13.703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.676 r_scangle_it 4.347 r_scbond_it 2.551 r_mcangle_it 1.383 r_angle_refined_deg 1.231 r_mcbond_it 0.7 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.192 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.171
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.676 r_scangle_it 4.347 r_scbond_it 2.551 r_mcangle_it 1.383 r_angle_refined_deg 1.231 r_mcbond_it 0.7 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.192 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_metal_ion_refined 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1369 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling X-PLOR phasing