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Phase transition of monoclinic lysozyme crystal soaked in a saturated NaCl solution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2D4J PDB Entry 2D4J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Dehydration-induced phase transition 7.6 293 NaCl, nitrogen-gas, pH 7.6, Dehydration-induced phase transition, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.54 20.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.085 α = 90 b = 59.055 β = 110.63 c = 30.703 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD BRUKER SMART 6000 Montel optics 2006-12-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 50 93.2 0.088 4.23 31839 29674
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.15 1.19 72.6 0.211 2.71 3167
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 2D4J 1.15 25 29547 1477 0.178 0.1773 0.203 Random 10.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.061 s_zero_chiral_vol 0.055 s_from_restr_planes 0.029 s_angle_d 0.027 s_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1028 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 6
Software Software Software Name Purpose SHELXL-97 model building SHELXL-97 refinement SAINT data reduction SAINT data scaling SHELXL-97 phasing