2Z12

Structure of the transformed monoclinic lysozyme by controlled dehydration


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2D4JPDB Entry 2D4J

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Dehydration induced phase transition293temperature-regulated nitragen gas, Dehydration induced phase transition, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.5118.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 25.947α = 90
b = 58.021β = 110.4
c = 30.58γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90CCDBRUKER SMART 6000Montel optics2007-01-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEMACSCIENCE1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.155099.90.0614.752998729957
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.151.190.1122.873029

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB Entry 2D4J1.15252988714940.1680.205Random5.84
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
s_non_zero_chiral_vol0.069
s_zero_chiral_vol0.063
s_angle_d0.029
s_from_restr_planes0.028
s_bond_d0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1031
Nucleic Acid Atoms
Solvent Atoms122
Heterogen Atoms5

Software

Software
Software NamePurpose
SHELXL-97model building
SHELXL-97refinement
SAINTdata reduction
SAINTdata scaling
SHELXL-97phasing