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Crystal structure of the Radixin FERM domain complexed with the NEP cytoplasmic tail
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GC7 PDB ENTRY 1GC7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 20% PEG3350, 0.2M DL-maleic acid, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.81 67.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.79 α = 90 b = 116.838 β = 90 c = 141.884 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 29.71 99.7 30656
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.2 3.31 97.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GC7 3.2 29.71 28899 1542 99.6 0.2344 0.23264 0.223 0.26712 0.2293 RANDOM 64.391
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 0.19 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.682 r_dihedral_angle_3_deg 19.287 r_dihedral_angle_4_deg 17.188 r_dihedral_angle_1_deg 5.045 r_scangle_it 3.15 r_mcangle_it 2.393 r_scbond_it 1.877 r_rigid_bond_restr 1.507 r_mcbond_it 1.383 r_angle_refined_deg 1.203
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.682 r_dihedral_angle_3_deg 19.287 r_dihedral_angle_4_deg 17.188 r_dihedral_angle_1_deg 5.045 r_scangle_it 3.15 r_mcangle_it 2.393 r_scbond_it 1.877 r_rigid_bond_restr 1.507 r_mcbond_it 1.383 r_angle_refined_deg 1.203 r_sphericity_bonded 0.658 r_nbtor_refined 0.311 r_nbd_refined 0.23 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.148 r_symmetry_hbond_refined 0.106 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7607 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing