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Salmonella enterica SadA 255-358 fused to GCN4 adaptors (SadAK12)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GCM PDB ENTRY 1GCM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 500 MM AMMONIUM TARTRATE, 100 MM SODIUM ACETATE PH 5.0
Crystal Properties Matthews coefficient Solvent content 3.3 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.63 α = 90 b = 48.63 β = 90 c = 366 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2009-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 38.3 99.5 0.09 13.8 7.3 18662
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.12 98.6 0.64 2.29 6.01
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GCM 2 38.26 17714 945 99.55 0.24413 0.24202 0.2397 0.28374 0.288 RANDOM 37.146
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 0.8 1.6 -2.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.287 r_dihedral_angle_4_deg 19.514 r_dihedral_angle_3_deg 15.617 r_scangle_it 7.306 r_scbond_it 5.796 r_dihedral_angle_1_deg 5.663 r_mcangle_it 3.903 r_mcbond_it 3.137 r_angle_refined_deg 1.294 r_mcbond_other 1.146
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.287 r_dihedral_angle_4_deg 19.514 r_dihedral_angle_3_deg 15.617 r_scangle_it 7.306 r_scbond_it 5.796 r_dihedral_angle_1_deg 5.663 r_mcangle_it 3.903 r_mcbond_it 3.137 r_angle_refined_deg 1.294 r_mcbond_other 1.146 r_angle_other_deg 0.922 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1161 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing