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Structural insights into RNA recognition by RIG-I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 0.1 M BICINE, PH 9.0, 22.5 % POLYETHYLENE GLYCOL 6,000
Crystal Properties Matthews coefficient Solvent content 2.3 46.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.618 α = 90 b = 76.208 β = 90 c = 219.825 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 45 93 0.08 14.5 5 26861 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.5 45 25452 1341 93.72 0.223 0.22036 0.2731 0.2393 RANDOM 57.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 1.53 -2.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.537 r_dihedral_angle_3_deg 18.123 r_dihedral_angle_4_deg 14.911 r_dihedral_angle_1_deg 6.255 r_scangle_it 2.168 r_angle_refined_deg 1.339 r_scbond_it 1.331 r_mcangle_it 1.012 r_mcbond_it 0.533 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.537 r_dihedral_angle_3_deg 18.123 r_dihedral_angle_4_deg 14.911 r_dihedral_angle_1_deg 6.255 r_scangle_it 2.168 r_angle_refined_deg 1.339 r_scbond_it 1.331 r_mcangle_it 1.012 r_mcbond_it 0.533 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4988 Nucleic Acid Atoms 424 Solvent Atoms 99 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement