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CRITHIDIA FASCICULATA CYTOCHROME C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YCC PDB ENTRY 1YCC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 2.45 M (NH4)2 SO4, 0.1 M HEPES (PH 6.5).
Crystal Properties Matthews coefficient Solvent content 2.2 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.93 α = 90 b = 110.88 β = 131.2 c = 60.93 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2008-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 56 97.6 0.12 14.8 6.5 60049 -3 21.56
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 100 0.69 2 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1YCC 1.55 55.81 57638 2411 97.06 0.20779 0.20634 0.2212 0.2408 0.2594 RANDOM 24.662
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 0.71 -0.26 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.839 r_dihedral_angle_4_deg 17.444 r_dihedral_angle_3_deg 12.738 r_dihedral_angle_1_deg 6.402 r_scangle_it 3.357 r_scbond_it 2.306 r_angle_refined_deg 2.19 r_mcangle_it 1.344 r_mcbond_it 0.843 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.839 r_dihedral_angle_4_deg 17.444 r_dihedral_angle_3_deg 12.738 r_dihedral_angle_1_deg 6.402 r_scangle_it 3.357 r_scbond_it 2.306 r_angle_refined_deg 2.19 r_mcangle_it 1.344 r_mcbond_it 0.843 r_chiral_restr 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2469 Nucleic Acid Atoms Solvent Atoms 563 Heterogen Atoms 164
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing