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Trypanosoma brucei PTR1 in complex with inhibitor WHF30
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X9G PDB ENTRY 2X9G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100 MM SODIUM CITRATE PH 5, 1.8 M SODIUM ACETATE
Crystal Properties Matthews coefficient Solvent content 2.05 39.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.55 α = 90 b = 90.29 β = 115.43 c = 82.46 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU CCD MIRRORS 2010-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 74.47 97.1 0.1 8.8 4.3 61006 23.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.1 93.9 0.39 3.3 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2X9G 2.01 40.85 61005 3277 97.11 0.23742 0.23516 0.2341 0.27959 0.2785 RANDOM 20.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.13 0.23 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.089 r_dihedral_angle_4_deg 14.947 r_dihedral_angle_3_deg 14.518 r_dihedral_angle_1_deg 5.464 r_scangle_it 2.52 r_scbond_it 1.551 r_angle_refined_deg 1.326 r_mcangle_it 1.085 r_mcbond_it 0.584 r_chiral_restr 0.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.089 r_dihedral_angle_4_deg 14.947 r_dihedral_angle_3_deg 14.518 r_dihedral_angle_1_deg 5.464 r_scangle_it 2.52 r_scbond_it 1.551 r_angle_refined_deg 1.326 r_mcangle_it 1.085 r_mcbond_it 0.584 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7473 Nucleic Acid Atoms Solvent Atoms 372 Heterogen Atoms 260
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing