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APO STRUCTURE OF CELLOBIOHYDROLASE 1 (CEL7A) FROM HETEROBASIDION ANNOSUM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z3V PDB ENTRY 1Z3V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.7 PROTEIN WAS CRYSTALLIZED FROM 20 MM MGCL2, 0.1 M HEPES, PH 7.5, 22% POLYACRYLIC ACID 5100, NA SALT.
Crystal Properties Matthews coefficient Solvent content 1.96 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.511 α = 90 b = 84.103 β = 103.36 c = 75.877 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MAR165 MULTILAYER MIRROR 2010-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.4 98.1 0.06 15.7 4.1 54342 3.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 96.5 0.23 5.5 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Z3V 1.9 28.1 54342 2859 98.1 0.20003 0.19725 0.1977 0.25265 0.2555 RANDOM 20.163
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 -0.26 2.33 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.101 r_dihedral_angle_4_deg 15.846 r_dihedral_angle_3_deg 12.874 r_dihedral_angle_1_deg 5.848 r_scangle_it 1.763 r_angle_refined_deg 1.1 r_scbond_it 1.091 r_mcangle_it 0.819 r_mcbond_it 0.452 r_chiral_restr 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.101 r_dihedral_angle_4_deg 15.846 r_dihedral_angle_3_deg 12.874 r_dihedral_angle_1_deg 5.848 r_scangle_it 1.763 r_angle_refined_deg 1.1 r_scbond_it 1.091 r_mcangle_it 0.819 r_mcbond_it 0.452 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6480 Nucleic Acid Atoms Solvent Atoms 923 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling CCP4I phasing